miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|213095991|gb|GE799590.1|GE799590 CGGGTTTAACGTCCATTTCAGGACTTTCAGACACTTCATCACCATTTAGCTCATAAACGCCCCCAGTGGATCTCTTCTTC
TCCTTTGTCTTTTTTCTCTGAGAGTCCACGACCGTCTCCTGGGAAGTCGGTGGAGTCGGTGCAACACAAACCGGTGGAGC
GCTTCCTGGTTGGCTCTTCTTGGCGTACTTGGCCATGAACTCAGCCTCCTGCTGCTCCAGCCTGGCTAACTTGGCGCTCA
TGGTCAAGCCGTGCCTGGCTCCTTTGTGAGCCGTGCGTCCTCCACAAGCCTTCATTAGATCAGCATCGGAAAGCTTTGTG
GTGCTGGAGAGATCCAGTTTCTGGTCGTCATCCTCGTCCGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGTCTGAGCT
GGAAGGCTTCGGCTCTGGTTGCAACTCACCAGACAGCAGTGTGGCTGACTTGACAAAGCATCCATAAAGTTTGGCTTTAG
CCAGCGCTCCTATCCGTGGCTTTTTATTGGAGATCATCCCATCCTCTTCATCTTCCTCCACCGTCTTCTTCAACTGAATA
CCGTTCTGATCAGACTCCATCTGCAGACTGGAAGACGCCTTATTGAAGACATGATCCCACCAGTGGAAGGTGAACTGCTC
CCCTTCCTTATGACCAACCCCTCCTTTGCCACATTTCACTTTGACCTTG




Most similar to sp|Q4V842|GPTC4_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4V842|GPTC4_XENLA G patch domain-containing protein 4
           OS=Xenopus laevis GN=gpatch4 PE=2 SV=1
          Length = 324

 Score =  152 bits (383), Expect = 3e-36
 Identities = 97/233 (41%), Positives = 120/233 (51%), Gaps = 21/233 (9%)
 Frame = -2

Query: 640 EQFTFHWWDHVFNKASSSLQMESDQNGIQLKKTVEEDEEDGMISNKKPRIGALAKAKLYG 461
           EQFTFHWWDHVFNK +SS+ +E+DQ+G+ + +     +ED  ++NKKPR     K  LYG
Sbjct: 58  EQFTFHWWDHVFNKTASSISVEADQDGVTVNRV---KDEDAPVTNKKPRKALSNKNMLYG 114

Query: 460 CFVKSATLLSGELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTKLSDADLMKACG 281
            FVKSATLLSG                                  S TKL+D DL K CG
Sbjct: 115 RFVKSATLLSG-------GEQPVKEPSSSESSDSSGDEDEKLDLSSATKLTDEDLKKVCG 167

Query: 280 GRTAHKGARHGLTMSAKLARLEQQEAEFMAKYAKKSQ---------------PGXXXXXX 146
           GRTAHKGARHGLTMSAKL+RLE+QE EF+AKY KK Q               PG      
Sbjct: 168 GRTAHKGARHGLTMSAKLSRLEEQEREFLAKYGKKEQKNKERDEKLERTQGLPGMNIQQI 227

Query: 145 XXXXXXXSQETVVDSQRKKTKEKKRSTGG----VYELNGDEVSESP--EMDVK 5
                  +  +   SQ KK K+K++          + NG E  + P  E +VK
Sbjct: 228 YSEEGIETNISHESSQHKKKKKKRKRADSERKEESQENGHEEEQMPPSEQEVK 280